[bouncytruck]

The problem is probably in your body mounts. If they are shot, you may have experienced some sagging once you took the top off. I know the top on my '72 doesn't fit around the door windows as nice as it did before I took it off for the first time. I probably should have replaced the body mounts before I pulled the top.

You might be able to jack up the center of the body and get the doors to align. I believe I read about this someplace on the board.