[jthomass]

Thanks for the advise Jaros and 49GMC. I agree that something isnt quite right with that inner rocker/floor section making it off a little. I did get the door back on (that was a lot of fun!) when I close the door and look from the inside it is a pretty consistant gap between the bottom of the door and the outer rocker lip where the seal goes so I think it should be fine that way since the outer rocker lip is lined up with the lip on the front and back pillar areas. Maybe I should order a new seal (since mine is long gone) and try it with the door closed?
I got all the pieces of the A pillar area bolted back together (another fun time) and the kick panel tacked in place.