I'd clean it and leave it in place. You are more liable to have the PCV valve suck oil in without it than have any actual vacuum issue one way or the other. Same as the valve covers that don't have a deflector under the PCV valve
The positive crank case ventilation system works on air in, air flow through and being drawn out by the engine's vacuum
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That is one reason that V8 Chebbys with a breather in both valve covers and No PCV or draft tube always have oil on the valve covers and oil leaks. The pressure in the crankcase has to go somewhere. I got that education on the 283 that I had in my T bucket and then in the 48.