4L80E wiring question for LS1 wiring harness

[chevybuilder18]

I have the mechanical part of my 5.3 connected correctly to the 4L80E with a new flexplate. i also have a new starter for a 6.0 liter. the thing is the 4L80E comes with a input shaft speed sensor and a normal VSS, that are similar.. the wiring harness i got came with a skip shift seloniod connector for a manual. but since i dont have that, i found out that same connector can plug into the input shaft speed sensor, could repin the connector to a different pin out.. so if anybody knows, i was thinking you guys would. any info would be appreciated