Something doesn't look right

[Cautrell05]

1964 C10 belongs to the shop owner. passenger window had came off the track. Seemed like an easy fix. Going back together I noticed that the window would not roll up all the way, stopped about an inch short of the top of he door frame. Messed with it a bit and got it all the way up but he strip on the bottom where it attaches to the regulator is now sitting above the weatherstrip on the doors. The drivers side is the same way but not quite as bad. It seriously looks like the glass is too short. What am i missing here? Thanks.

Nick